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PUBLICATIONS
Publications
FIMAR selected publications
2025
War on antimicrobial resistance: High carriage rates of multidrug-resistant bacteria among war-injured Ukrainian refugees.
Aro, T., Häkkinen, T. A., Holmberg, V., Kajova, M., & Kantele, A. (2025). Clinical Microbiology and Infection, S1198743X25003507. https://doi.org/10.1016/j.cmi.2025.07.010
Use of sequence barcodes for tracking horizontal gene transfer of antimicrobial resistance genes in a microbial community.
Partanen, V., Dekić Rozman, S., Karkman, A., Muurinen, J., Hiltunen, T., & Virta, M. (2025). ISME Communications, 5(1), ycaf113. https://doi.org/10.1093/ismeco/ycaf113
Carriage of Extended-Spectrum Beta-Lactamase-Producing Enterobacterales Among Healthy Adults – a Cohort Study in Finland.
Nousiainen, A., Häkkinen, T., Kivikoski, M., Gladstone, R., Corander, J., Jokiranta, T., & Kantele, A. (2025). CMI Communications, 105129. https://doi.org/10.1016/j.cmicom.2025.105129
Pre-exposure of abundant species to disturbance improves resilience in microbial metacommunities.
Cairns, J., Hogle, S., Alitupa, E., Mustonen, V., & Hiltunen, T. (2025). Nature Ecology & Evolution, 9(3), 395–405. https://doi.org/10.1038/s41559-024-02624-0
Development Histories, AMR Futures, and the Biosociality of a ‘Hotspot’.
Butcher, A. (2025). Engaging Science, Technology, and Society, 11(1). https://doi.org/10.17351/ests2023.1517
Travel to low- and middle-income countries and travellers’ diarrhoea increase risk of mismatching antimicrobial therapy for urinary tract infection.
Patjas, A., & Kantele, A. (2025). Journal of Travel Medicine, 32(4), taaf025. https://doi.org/10.1093/jtm/taaf025
Carbapenemase-producing Enterobacterales emerging in Finland’s capital region over 2010–2023: Increasing proportion of CPE cases first detected in clinical samples.
Kajova, M., Khawaja, T., Kainulainen, K., & Kantele, A. (2025). Clinical Microbiology and Infection, 31(2), 296–297. https://doi.org/10.1016/j.cmi.2024.10.005
Temporal Changes in the Role of Species Sorting and Evolution Determine Community Dynamics.
Hoffmann, J., Hogle, S., Hiltunen, T., & Becks, L. (2025). Ecology Letters, 28(1), e70033. https://doi.org/10.1111/ele.70033
2024
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan.
Khawaja, T., Mäklin, T., Kallonen, T., Gladstone, R. A., Pöntinen, A. K., Mero, S., Thorpe, H. A., Samuelsen, Ø., Parkhill, J., Izhar, M., Akhtar, M. W., Corander, J., & Kantele, A. (2024). Nature Communications, 15(1), 5196. https://doi.org/10.1038/s41467-024-49591-5
Bacterial hosts of clinically significant beta-lactamase genes in Croatian wastewaters.
Dekić Rozman, S., Puljko, A., Karkman, A., Virta, M., & Udiković-Kolić, N. (2024). FEMS Microbiology Ecology, 100(6), fiae081. https://doi.org/10.1093/femsec/fiae081
Quantifying massively parallel microbial growth with spatially mediated interactions.
Borse, F., Kičiatovas, D., Kuosmanen, T., Vidal, M., Cabrera-Vives, G., Cairns, J., Warringer, J., & Mustonen, V. (2024). PLOS Computational Biology, 20(7), e1011585. https://doi.org/10.1371/journal.pcbi.1011585
Urinary tract infections: A retrospective cohort study of (mis)matching antimicrobial therapy and clinical outcome among Finnish adults.
Patjas, A., Jokiranta, T. S., & Kantele, A. (2024). JAC-Antimicrobial Resistance, 6(6), dlae188. https://doi.org/10.1093/jacamr/dlae188
From super-wicked problems to more-than-human justice: New bioethical frameworks for antimicrobial resistance and climate emergency.
Sudenkaarne, T., & Butcher, A. (2024). Monash Bioethics Review, 42(S1), 51–71. https://doi.org/10.1007/s40592-024-00197-z
Doing ethics with microbes: Toward a queer feminist posthuman framework for bioethics.
Sudenkaarne, T., Sariola, S., & The Centre for the Social Study of Microbes (CSSM). (2024). Wellcome Open Research, 9, 494. https://doi.org/10.12688/wellcomeopenres.21391.1
Exploring Antibiotic Use in the Community: A Household-Based Survey Using the Drug Bag Method in Rural Burkina Faso.
Compaoré, A., Rouamba, T., Kaboré, B., Jacobs, J., Peeters Grietens, K., & Sariola, S. (2024). Antibiotics, 13(9), 872. https://doi.org/10.3390/antibiotics13090872
Complete genome sequences of 30 bacterial species from a synthetic community.
Hogle, S. L., Tamminen, M., & Hiltunen, T. (2024). Microbiology Resource Announcements, 13(6), e00111-24. https://doi.org/10.1128/mra.00111-24
2023
Addressing antibiotic resistance: computational answers to a biological problem?
Behling, A.H., Wilson, B.C., Ho, D., Virta, M., O’Sullivan, J.M. and Vatanen, T.
Current Opinion in Microbiology, 74:102305
Metagenomic analysis of the abundance and composition of antibiotic resistance genes in hospital wastewater in Benin, Burkina Faso, and Finland.
Markkanen, M., Haukka, K., Pärnänen, K., Bonkoungou, I., Dougnon, V., Sarekoski, A., Karkman, A., Kantele, A. and Virta, M. mSphere, e0053822.
Safety and immunogenicity of ETVAX®, an oral inactivated vaccine against enterotoxigenic Escherichia coli diarrhoea: a double-blinded, randomised, placebo-controlled trial among Finnish travellers to Benin, West-Africa.
Kantele A, Riekkinen M, Jokiranta TS, Pakkanen SH, Pietilä J-P, Patjas A, Eriksson M, Khawaja T, Klemets P, Marttinen K, Siikamäki H, Lundgren A, Holmgren J, Lissmats A, Carlin N, Svennerholm AM. J Travel Med. 2023 Nov 18;30(7):taad045. doi: 10.1093/jtm/taad045. PMID: 37099803; PMCID: PMC10658657.
2022
Antibiotic resistomes and microbiomes in the surface water along the Code River in Indonesia reflect drainage basin anthropogenic activities.
Muurinen J., Muziasari, W., Hultman, J., Pärnänen, K., Narita, V., Lyra, C., Fadlillah, L., Rizki, L.P., Nurmi, W., Tiedje, J.M., Dwiprahasto, I., Hadi, P. and Virta, M. Environmental Science and Technology, 56:14994–15006.
Application of magnetic biochar/quaternary phosphonium salt to combat the antibiotic resistome in livestock wastewater.
Fu, Y., Wang, F., Wang, Z., Mei, Z., Jiang, X., Schaefferd, A., Virta, M., Tiedje, JM.
Science of The Total Environment, 811:151386.
Early-life formula feeding is associated with infant gut microbiota alterations and an increased antibiotic resistance load.
Pärnänen, K., Hultman, J., Satokari, R., Rautava, S., Lamendella, R., Wright, J., McLimans, C., Kelleher, S., and Virta, M. American Journal of Clinical Nutrition, nqab353.
A Model Innovation: Improving Disease Management for Meeting the Challenges of Bangladesh’s Aquaculture Hatchery Sector.
Butcher, A.; Rahman, M. M.; Hinchliffe, S. International Journal of Sociology of Food and Agriculture: https://doi.org/10.48416/ijsaf.v27i2.70
In Critique of Anthropocentrism: a more-than-human ethical framework for antimicrobial resistance.
Cañada, J. A., Sariola S., Butcher. A. Medical Humanities: doi:10.1136/medhum-2021-012309
Doxycycline as an antimalarial: Impact on travellers' diarrhoea and doxycycline resistance among various stool bacteria - Prospective study and literature review.
Kantele, Anu et al. Travel medicine and infectious disease, vol. 49: 102403. doi:10.1016/j.tmaid.2022.102403
European hospitals as source of multidrug-resistant bacteria: analysis of travellers screened in Finland after hospitalization abroad.
Kajova, Mikael et al. Journal of travel medicine, vol. 29,4: taac022. doi:10.1093/jtm/taac022
International travel and travelers' diarrhea - Increased risk of urinary tract infection.
Patjas, Anu, and Anu Kantele. Travel medicine and infectious disease vol. 48 (2022): 102331.mSystems: https://doi.org/10.1128/msystems.00150-22
Closing the GAP in Antimicrobial Resistance Policy in Benin and Burkina Faso.
Patjas, Anu, and Anu Kantele. Travel medicine and infectious disease, vol. 48: 102331. doi:10.1016/j.tmaid.2022.102331
Strong selective environments determine evolutionary outcome in time-dependent fitness seascapes.
Cairns J, Borse F., Mononen T., Hiltunen T., Mustonen V. Evolution Letters: https://doi.org/10.1002/evl3.284
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